Plant Soil Environ., 2010, 56(8):375-383 | DOI: 10.17221/247/2009-PSE
Biochemical characterization and metabolic diversity of soybean rhizobia isolated from Malwa region of Central India
- Microbiology Section, Directorate of Soybean Research (ICAR), Indore, India
Soybean cultivation in many zones of India shows occurrence of native rhizobia besides other exotically adapted strains. In the current study, 22 rhizobial isolates (recovered from 12 different soybean growing sites) and 8 reference strains were selected for biochemical and metabolic characterization. Of 22 isolates, 18 were recovered as fast growing isolates while the rest were slow growing based on bromothymol blue (BTB) test. Unlike earlier belief that rhizobia have no ability to grow on glucose peptone agar medium, in this study, some isolates and some reference strains grew well on this medium. Similarly, when all the isolates were subjected to ketolactose test, some of the isolates were found to show growth on the medium. In contrast, based on C-utilization pattern (15 carbohydrates) a remarkable metabolic diversity was observed among the rhizobial isolates recovered in the study. The clustering and matching analysis showed that most of isolates were matching with slow growing reference strains, a few were with fast growing reference strains and some were found to be unique and hence not matching with any of reference strains. Such analysis suggests the occurrence of metabolically distinct types of rhizobia besides commonly known types (B. japonicum, B. elkanii and S. fredii) of soybean rhizobia and further validation is suggested through 16SrRNA gene sequencing technique.
Keywords: soybean rhizobia; metabolic diversity; biochemical characterization
Published: August 31, 2010 Show citation
ACS | AIP | APA | ASA | Harvard | Chicago | Chicago Notes | IEEE | ISO690 | MLA | NLM | Turabian | Vancouver |
References
- Abaidoo R.C., Keyser H.H., Singleton P.W., Borthakur D. (2002): Comparison of molecular and antibiotic resistance profile methods for the population analysis of Bradyrhizobium spp. (TGx) isolates that nodulate the new TGx soybean cultivars in Africa. Journal of Applied Microbiology, 92: 109-117.
Go to original source...
Go to PubMed...
- Amarger N.O., Macheret V., Laguerre G. (1997): Rhizobium gallicum sp. nov. and Rhizobium giardinii sp. nov., from Phaseolus vulgaris nodules. International Journal of Systematic Bacteriology, 47: 996-1006.
Go to original source...
Go to PubMed...
- Appunu C.N., Zoue A., Laguerre G. (2008): Genetic diversity of native bradyrhizobia isolated from soybeans (Glycine max L.) in different agricultural-ecological-climatic regions of India. Applied and Environment Microbiology, 74: 5991-5996.
Go to original source...
Go to PubMed...
- Grange L., Hungria M. (2004): Genetic diversity of indigenous common bean (Phaseolus vulgaris) rhizobia in two Brazilian ecosystems. Soil Biology and Biochemistry, 36: 1389-1398.
Go to original source...
- Hua S.S.T., Tsai V.Y., Lichen G.M., Noma A.T. (1982): Accumulation of aminoacids in Rhizobium spp. Strain WR-1001 in responses of NaCl salinity. Applied and Environment Microbiology, 44: 135-150.
Go to original source...
Go to PubMed...
- Hungria M., Campo R.J., Chueire L.M.O., Grange L., Megías M. (2001): Symbiotic effectiveness of fast-growing rhizobial strains isolated from soybean nodules in Brazil. Biology Fertility Soils, 33: 387-394.
Go to original source...
- Kennedy A.C. (1994): Carbon utilization and fatty acid profiles for characterization of bacteria. In: Weaver R.W., Angle S., Bottomly P. (eds): Methods of Soil Analysis. Art 2, Microbiological and Biochemical Properties. Soil Sciences Society of America. Madison, 554-556.
Go to original source...
- Kuykendall L.D., Saxena B., Devine T.E., Udell S.E. (1992): Genetic diversity of Bradyhizobium japonicum Jordan 1982 and proposal for Bradyrhizobium elkanii sp. Nov. Canadian Journal of Microbiology, 38: 501-505.
Go to original source...
- Ladha J.K., So R.B. (1994): Numerical taxonomy of photosynthetic rhizobia nodulating Aeschynomense species. International Journal of Systematic Bacteriology, 44: 62-63.
Go to original source...
- Loureiro F.M., Kaschuk G., Alberton O., Hungria M. (2007) Soybean [Glycine max (L.) Merrill] rhizobial diversity in Brazilian oxisols under various soil, cropping, and inoculation managements. Biology and Fertility Soils, 43: 665-674.
Go to original source...
- Padmanabham S., Hirtt R.D., Broughtan W.J. (1990): Rhizobia in tropical legumes: cultural characteristics of Bradyrhizobium and Rhizobium spp. Soil Biology and Biochemistry, 22: 23-28.
Go to original source...
- Sadowsky M.J., Keyser H.H., Bohlool B.B. (1983): Biochemical characterization of fast- and slow-growing rhizobia that nodulate soybeans. International Journal of Systematic Bacteriology, 33: 716-722.
Go to original source...
- Saeki Y., Aimi N., Tsukamoto S., Yamakawa T., Nagatomo Y., Akao S. (2006): Diversity and geographical distribution of indigenous soybean-nodulating bradyrhizobia in Japan. Soil Science and Plant Nutrition, 52: 418-426.
Go to original source...
- Sa e k i Y., K a n e k o A., H a r a T., S u z u k i K., Ya m a k aw a T., Nguyen M.T., Nagatomo Y., Akao S. (2005): Phylogenetic analysis of soyb e an-no dulating rhi zobia isolate d f rom alkaline soils in Vietnam. Soil Science and Plant Nutri tion, 51: 1043-1052.
Go to original source...
- Satya Prakash C., Annapurna K. (2006): Diversity of a soybean bradyrhizobial population adapted to an Indian soil. Journal of Plant Biochemistry and Biotechnology, 15: 27-32.
Go to original source...
- Sharma S.K. (2006): Selection of effective plant growth promoting rhizobacteria for soybean-wheat cropping system. [Ph.D Thesis] G.B. Pant University of Agriculture and Technology, Pantnagar, Uttaranchal.
- Sharma S.K., Sahgal M., Johri B.N. (2006): Genetic diversity among rhizobia nodulating soybean (Glycine max L.Merrill) cultivar grown in Central India. Proceeding of 47 th AMI Annual conference held at Barkattulah University, Bhopal, India from Dec. 6-8, 154.
- Somasegaran P., Hoben H.J. (1985): Methods in legume-rhizobium technology NifTAL project and MIRCEN. University of Hawaii, Maui.
- Somasegaram P., Hoben H.J. (1994): Handbook for Rhizobia: Methods in legume-Rhizobium Technology. Springer-Verlag, New York.
- Swelim D.M., Hashem F.M., Kuykendall L.D., Hegazi N.I., Wahab S.M. (1997): Host specificity and phenotypic diversity of Rhizobium strains nodulating Leucaena, Acacia, and Sesbania in Egypt. Biology and Fertility of Soils, 25: 224-232.
Go to original source...
- Tiwari S.P. (2003): Improvement of yield and yield potential in soybean: an analysis and synthesis. Journal of Oilseeds Research, 20: 1-8.
- Wani S.P., Rupela O.P., Lee K.K. (1995): Sustainable agriculture in the semi-arid tropics through biological nitrogen fixation in grain legumes. Plant and Soil, 174: 29-49.
Go to original source...
- Zabaloy M.C., Gómez M.A. (2005): Diversity of rhizobia isolated from an agricultural soil in Argentina based on carbon utilization and effects of herbicides on growth. Biology and Fertility of Soils, 42: 83-88.
Go to original source...
This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.