Plant Soil Environ., 2015, 61(3):127-136 | DOI: 10.17221/999/2014-PSE
Contrasting effects of long-term fertilization on the community of saprotrophic fungi and arbuscular mycorrhizal fungi in a sandy loam soilOriginal Paper
- 1 State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, P.R. China
- 2 State Key Laboratory of Soil and Sustainable Agriculture, Joint Open Laboratory of Soil and the Environment, Hong Kong Baptist University and Institute of Soil Science, Chinese Academy of Sciences, Nanjing, P.R. China
- 3 Department of Plant and Environmental Sciences, Faculty of Sciences, University of Copenhagen, Frederiksberg, Denmark
The changes of saprotrophic fungi (SF) and symbiotic arbuscular mycorrhizal fungi (AMF) in response to different fertilizers were investigated in a period of 21 years. Denaturing gradient gel electrophoresis profiles showed fungal community structure significantly changed after long-term fertilization. Long-term organic and mineral fertilization significantly increased the SF diversity, whereas mineral fertilization decreased the AMF diversity. SF quantity significantly increased in response to organic fertilizers, whereas the AMF propagules were down-regulated by nutrient-rich fertilization but induced by N, P or K-deficiency. Redundancy analysis showed that long-term fertilization differentially affected diversity and quantity of SF and AMF. Nutrient-rich organic fertilizers, resulting in higher contents of soil organic C (SOC), total N and mineral N, total and available P, regulated the quantity and diversity of SF positively and quantity of AMF negatively, respectively. The diversity of AMF was slightly down-regulated by SOC, total and mineral N and total P as well as the nutrient-rich mineral treatments, in contrast to the positive effects by available K and P. These results indicate that soil nutritional status and fertilizer types significantly affect SF and AMF. Our study of soil fungal community in response to the long-term fertilization can provide new strategies for agronomic practice.
Keywords: fungal rRNA gene; Shannon-Wiener diversity; fungal quantity; microbial communities; quantitative-PCR
Published: March 31, 2015 Show citation
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References
- Antunes P.M., Lehmann A., Hart M.M., Baumecker M., Rillig M.C. (2012): Long-term effects of soil nutrient deficiency on arbuscular mycorrhizal communities. Functional Ecology, 26: 532-540.
Go to original source...
- Beauregard M.S., Gauthier M.P., Hamel C., Zhang T., Welacky T., Tan C.S., St-Arnaud M. (2013): Various forms of organic and inorganic P fertilizers did not negatively affect soil- and root-inhabiting AM fungi in a maize-soybean rotation system. Mycorrhiza, 23: 143-154.
Go to original source...
Go to PubMed...
- Boddy L., Frankland J.C., van West P. (2007): Ecology of Saprotrophic Basidiomycetes. Amsterdam, Elsevier Academic.
- Chen R., Hu J., Dittert K., Wang J., Zhang J., Lin X. (2011): Soil total nitrogen and natural 15nitrogen in response to long-term fertilizer management of a maize-wheat cropping system in Northern China. Communications in Soil Science and Plant Analysis, 42: 322-331.
Go to original source...
- Cornejo P., Azcón-Aguilar C., Barea J.M., Ferrol N. (2004): Temporal temperature gradient gel electrophoresis (TTGE) as a tool for the characterization of arbuscular mycorrhizal fungi. FEMS Microbiology Letters, 241: 265-270.
Go to original source...
Go to PubMed...
- Cuadros-Orellana S., Leite L.R., Smith A., Medeiros J.D., Badotti F., Fonseca P.L.C., Vaz A.B.M., Oliveira G., Góes-Neto A. (2013): Assessment of fungal diversity in the environment using metagenomics: A decade in review. Fungal Genomics and Biology, 3: 110-122.
- Diacono M., Montemurro F. (2010): Long-term effects of organic amendments on soil fertility. A review. Agronomy for Sustainable Development, 30: 401-422.
Go to original source...
- Gardes M., Bruns T.D. (1993): ITS primers with enhanced specificity of basidiomycetes - Application to the identification of mycorrhizae and rusts. Molecular Ecology, 2: 113-118.
Go to original source...
Go to PubMed...
- Ge Y., Zhang J.B., Zhang L.M., Yang M., He J.Z. (2008): Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China. Journal of Soils and Sediments, 8: 43-50.
Go to original source...
- Helgason T., Daniell T.J., Husband R., Fitter A.H., Young J.P.W. (1998): Ploughing up the wood-wide web? Nature, 394: 431.
Go to original source...
Go to PubMed...
- Hršelová H., Chvátalová I., Vosátka M., Klír J., Gryndler M. (1999): Correlation of abundance of arbuscular mycorrhizal fungi, bacteria and saprophytic microfungi with soil carbon, nitrogen and phosphorus. Folia Microbiologica, 44: 683-687.
Go to original source...
- Johnson N.C., Rowland D.L., Corkidi L., Egerton-Warburton L.M., Allen E.B. (2003): Nitrogen enrichment alters mycorrhizal allocation at five mesic to semiarid grasslands. Ecology, 84: 1895-1908.
Go to original source...
- Kiers E.T., Duhamel M., Beesetty Y., Mensah J.A., Franken O., Verbruggen E., Fellbaum C.R., Kowalchuk G.A., Hart M.M., Bago A., Palmer T.M., West S.A., Vandenkoornhuyse P., Jansa J., Bücking H. (2011): Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis. Science, 333: 880-882.
Go to original source...
Go to PubMed...
- Kumar D., Shivay Y.S., Dhar S., Kumar C., Prasad R. (2013): Rhizospheric flora and the influence of agronomic practices on them: A Review. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, 83: 1-14.
Go to original source...
- Liang Z., Drijber R.A., Lee D.J., Dwiekat I.M., Harris S.D., Wedin D.A. (2008): A DGGE-cloning method to characterize arbuscular mycorrhizal community structure in soil. Papers in Plant Pathology, 40: 956-966.
Go to original source...
- Lin X., Feng Y., Zhang H., Chen R., Wang J., Zhang J., Chu H. (2012): Long-term balanced fertilization decreases arbuscular mycorrhizal fungal diversity in an arable soil in north China revealed by 454 pyrosequencing. Environmental Science and Technology, 46: 5764-5771.
Go to original source...
Go to PubMed...
- Mäder P., Fließbach A., Dubois D., Gunst L., Fried P., Niggli U. (2002): Soil fertility and biodiversity in organic farming. Science, 296: 1694-1697.
Go to original source...
Go to PubMed...
- Muyzer G., de Waal E.C., Uitterlinden A.G. (1993): Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology, 59: 695-700.
Go to original source...
Go to PubMed...
- Olsson O., Olsson P.A., Hammer E.C. (2014): Phosphorus and carbon availability regulate structural composition and complexity of AM fungal mycelium. Mycorrhiza, 24: 443-451.
Go to original source...
Go to PubMed...
- Prévost-Bouré N.C., Christen R., Dequiedt S., Mougel C., Leliévre M., Jolivet C., Shahbazkia H.R., Guillou L., Arrouays D., Ranjard L. (2011): Validation and application of a PCR primer set to quantify fungal communities in the soil environment by realtime quantitative PCR. Plos One, 6: 1-13.
Go to original source...
Go to PubMed...
- Simon L., Lalonde M., Bruns T.D. (1992): Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular endomycorrhizal fungi colonizing roots. Applied and Environmental Microbiology, 58: 291-295.
Go to original source...
Go to PubMed...
- Smith S.E., Read D.J. (2008): Mycorrhizal Symbiosis. 3rd Ed. New York, Academic Press.
- Verbruggen E., Röling W.F.M., Gamper H.A., Kowalchuk G.A., Verhoef H.A., van der Heijden M.G.A. (2010): Positive effects of organic farming on below-ground mutualists: Large-scale comparison of mycorrhizal fungal communities in agricultural soils. New Phytologist, 186: 968-979.
Go to original source...
Go to PubMed...
- White T.J., Bruns T.D., Lee S.B., Taylor J.W. (1990): Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., White T.J. (eds): PCR Protocols - A Guide to Methods and Applications. San Diego, Academic Press, 315-322.
Go to original source...
- Zhang J.J., Li H., Gao H.J., Zhu P., Gao Q., Wang L.C. (2014): Effects of long-term fertilization and cropping regimes on total nitrogen and organic nitrogen forms in a Mollisol of Northeast China. Plant, Soil and Environment, 60: 544-549.
Go to original source...
- Zhong W., Gu T., Wang W., Zhang B., Lin X., Huang Q., Shen W. (2010): The effects of mineral fertilizer and organic manure on soil microbial community and diversity. Plant and Soil, 326: 511-522.
Go to original source...
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