Plant Soil Environ., 2024, 70(9):562-579 | DOI: 10.17221/250/2024-PSE
Effects of cultivation duration of the crop and growth stages on rhizosphere soil physicochemical properties, enzyme activities, and microbial communities of ginseng under forestOriginal Paper
- 1 Yanbian University, Yanji, Jilin Province, P.R. China
- 2 Jilin Academy of Agricultural Sciences, Changchun, Jilin Province, P.R. China
In this study, Illumina MiSeq sequencing of 16S and ITS2 rRNA genes were used to determine the dynamic changes in bacterial and fungal communities and soil properties and enzyme activities in rhizosphere soil of ginseng under forest after 5, 10 and 15 years of cultivation and different growth stages. Results showed that the changes were particularly prominent in 10-year-old ginseng under forest, and the trends of organic carbon, alkaline hydrolysed nitrogen, and available potassium were extremely similar in different duration of the crop, especially in the middle stage of rapid root growth, when soil nutrient consumption was severe, and soil enzyme activities of rhizosphere were significantly reduced. The observed changes in soil properties and enzyme activities caused by the cultivation duration of the crop and growth stage could be explained by the variations in the microbiome. The microbial composition of 10-year-old ginseng under forest has undergone significant changes, at the genus level, both Acinetobacter bacteria and Kazachstania fungi exhibited a higher abundance; the abundance of Bacillota (Firmicutes), and Candidatus udaeobacter with significantly lower abundance. This study initially revealed the changes in nutrient utilisation of ginseng under forest at different cultivation duration of the crop and different growth stages, as well as the regulatory role played by microbes in this process preliminarily. We consider 10 years to be a critical stage for the long-term cultivation of ginseng in the forest, during which it is more sensitive to environmental factors and may exhibit special dynamic changes affecting its growth and quality. This provides a reference for further precision planting and harvesting of ginseng under the forest.
Keywords: Panax; nutrient cycling; microbial diversity; micro-ecology; microbiota
Received: May 16, 2024; Revised: July 4, 2024; Accepted: July 8, 2024; Prepublished online: August 26, 2024; Published: August 29, 2024 Show citation
ACS | AIP | APA | ASA | Harvard | Chicago | Chicago Notes | IEEE | ISO690 | MLA | NLM | Turabian | Vancouver |
References
- Aizi T., Lijuan L., Lihua L., Wei L., Jiamei Q. (2023): Comparative analysis of microbial community structure in different times of rhizosphere microbiome and soil properties under larch forest. BMC Genomic Data, 24: 51.
Go to original source...
Go to PubMed...
- Atkinson D., Watson C.A. (2000): The beneficial rhizosphere: a dynamic entity. Applied Soil Ecology, 15: 99-104.
Go to original source...
- Beimforde C., Feldberg K., Nylinder S., Rikkinen J., Tuovila H., Dörfelt H., Gube M., Jackson D.J., Reitner J., Seyfullah L.J., Schmidt A.R. (2014): Estimating the phanerozoic history of the Ascomycota lineages: combining fossil and molecular data. Molecular Phylogenetics and Evolution, 78: 386-398.
Go to original source...
Go to PubMed...
- Bian X.B., Yang X.H., Li Q., Sun X. (2022): Effects of planting of two common crops, Allium fistulosum and Brassica napus, on soil properties and microbial communities of ginseng cultivation in Northeast China. BMC Microbiology, 22: 182.
Go to original source...
Go to PubMed...
- Bilias F., Barbayiannis N. (2019): Potassium availability: an approach using thermodynamic parameters derived from quantity-intensity relation-ships. Geoderma, 338: 355-364.
Go to original source...
- Cenini V.L., Fornara D.A., McMullan G., Ternan N., Carolan R., Crawley M.J., Clément J.C., Lavorel S. (2016): Linkages between extracellular enzyme activities and the carbon and nitrogen content of grassland soils. Soil Biology and Biochemistry, 96: 198-206.
Go to original source...
- Chen F.H., Xie Y.J., Jia Q.W., Li S.Y., Li S.Y., Shen N.K., Jiang M.G., Wang Y.B. (2023): Effects of the continuous cropping and soilborne diseases of C.A. Meyer on rhizosphere soil physicochemical properties, enzyme activities, and microbial communities. Agronomy-Basel, 13: 210.
Go to original source...
- Chen S., Qi G.F., Luo T., Zhang H.C., Jiang Q.K., Wang R., Zhao X.Y. (2018): Continuous-cropping tobacco caused variance of chemical proper-ties and structure of bacterial network in soils. Land Degradation and Development, 29: 4106-4120.
Go to original source...
- Chen Y.D., Du J.F., Li Y., Tang H., Yin Z.Y., Yang L., Ding X.H. (2022): Evolutions and managements of soil microbial community structure drove by continuous cropping. Frontiers in Microbiology, 13: 839494.
Go to original source...
Go to PubMed...
- Dong L.L., Xu J., Zhang L.J., Yang J., Liao B.S., Li X.W., Chen S.L. (2017): High-throughput sequencing technology reveals that continuous crop-ping of American ginseng results in changes in the microbial community in arable soil. Chinese Medicine, 12: 18.
Go to original source...
Go to PubMed...
- Fan D.Q., Zhang Y.Q., Qin S.G., Wu B. (2017): Relationships between communities and environmental factors following sand-dune stabilization in the Mu Us desert, Northwest China. Journal of Forestry Research, 28: 115-124.
Go to original source...
- Fira D., Dimkic I., Beric T., Lozo J., Stankovic S. (2018): Biological control of plant pathogens by Bacillus species. Journal of Biotechnology, 285: 44-55.
Go to original source...
Go to PubMed...
- Floch C., Capowiez Y., Criquet S. (2009): Enzyme activities in apple orchard agroecosystems: how are they affected by management strategy and soil properties. Soil Biology and Biochemistry, 41: 61-68.
Go to original source...
- Fuqua W.C., Winans S.C. (1994): A LuxR-LuxI type regulatory system activates Agrobacterium Ti plasmid conjugal transfer in the presence of a plant tumor metabolite. Journal of Bacteriology, 176: 2796-2806.
Go to original source...
Go to PubMed...
- Gao M.L., Song W.H., Zhou Q., Ma X.J., Chen X.Y. (2013): Interactive effect of oxytetracycline and lead on soil enzymatic activity and microbial biomass. Environmental Toxicology and Pharmacology, 36: 667-674.
Go to original source...
Go to PubMed...
- Gianello C., Bremner J.M. (1986): Comparison of chemical methods of assessing potentially available organic nitrogen in soil. Communications in Soil Science and Plant Analysis, 17: 215-236.
Go to original source...
- Gianfreda L. (2015): Enzymes of importance to rhizosphere processes. Journal of Soil Science and Plant Nutrition, 15: 283-306.
Go to original source...
- Goodwin P.H. (2022): The rhizosphere microbiome of ginseng. Microorganisms, 10: 1152.
Go to original source...
Go to PubMed...
- Jin Q., Zhang Y.Y., Ma Y.Y., Sun H., Guan Y.M., Liu Z.B., Ye Q., Zhang Y., Shao C., Mu P., Wang Q.X. (2022): The composition and function of the soil microbial community and its driving factors before and after cultivation of Panax ginseng in farmland of different ages. Ecological Indicators, 145: 109748.
Go to original source...
- Johansson L.H., Borg H.L.A. (1988): A spectrophotometric method for determination of catalase activity in small tissue samples. Analytical Bio-chemistry, 174: 331-336.
Go to original source...
Go to PubMed...
- Jones D.L., Willett V.B. (2006): Experimental evaluation of methods to quantify dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) in soil. Soil Biology and Biochemistry, 38: 991-999.
Go to original source...
- Kanse O.S., Whitelaw-Weckert M., Kadam T.A., Bhosale H.J. (2015): Phosphate solubilization by stress-tolerant soil fungus SLS8 isolated from the Neem rhizosphere. Annals of Microbiology, 65: 85-93.
Go to original source...
- Kumar S., Garkoti S.C. (2022): Rhizosphere influence on soil microbial biomass and enzyme activity in banj oak, chir pine and banj oak regenera-tion forests in the central Himalaya. Geoderma, 409: 115626.
Go to original source...
- Li X.G., Jousset A., de Boer W., Carrión V.J., Zhang T.L., Wang X.X., Kuramae E.E. (2019): Legacy of land use history determines reprogramming of plant physiology by soil microbiome. ISME Journal, 13: 738-751.
Go to original source...
Go to PubMed...
- Li Y., Fang F., Wei J.L., Wu X.B., Cui R.Z., Li G.S., Zhang F.L., Tan D.S. (2019): Humic acid fertilizer improved soil properties and soil microbial diversity of continuous cropping peanut: a three-year experiment. Scientific Reports, 9: 12014.
Go to original source...
Go to PubMed...
- Li Y.Y., Dang H.L., Lv X.H., Wang Z.K., Pu X.Z., Zhuang L. (2022): High-throughput sequencing reveals rhizosphere fungal community composi-tion and diversity at different growth stages of in the lower reaches of the Tarim River. Peerj, 10: e13552.
Go to original source...
Go to PubMed...
- Liu Q.W., Wang S.X., Li K., Qiao J., Guo Y.S., Liu Z.D., Guo X.W. (2021a): Responses of soil bacterial and fungal communities to the long-term monoculture of grapevine. Applied Microbiology and Biotechnology, 105: 7035-7050.
Go to original source...
Go to PubMed...
- Liu X., Wang Y.Z., Liu Y.H., Chen H., Hu Y.L. (2020): Response of bacterial and fungal soil communities to Chinese fir (Cunninghamia lanceolate) long-term monoculture plantations. Frontiers in Microbiology, 11: 00181.
Go to original source...
Go to PubMed...
- Liu Z., Wang C.Z., Zhu X.Y., Wan J.Y., Zhang J., Li W., Ruan C.C., Yuan C.S. (2017): Dynamic changes in neutral and acidic ginsenosides with different cultivation ages and harvest seasons: identification of chemical characteristics for quality control. Molecules, 22: 734.
Go to original source...
Go to PubMed...
- Liu Z.X., Liu J.J., Yu Z.H., Yao Q., Li Y.S., Liang A., Zhang W., Mi G., Jin J., Liu X.B., Wang G.H. (2020b): Long-term continuous cropping of soy-bean is comparable to crop rotation in mediating microbial abundance, diversity and community composition. Soil and Tillage Research, 197: 104503.
Go to original source...
- Maguire V.G., Bordenave C.D., Nieva A.S., Llames M.E., Colavolpe M.B., Gárriz A., Ruiz O.A. (2020): Soil bacterial and fungal community struc-ture of a rice monoculture and rice-pasture rotation systems. Applied Soil Ecology, 151: 103535.
Go to original source...
- Miranda K.M., Espey M.G., Wink D.A. (2001): A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite. Nitric Oxide, 5: 62-71.
Go to original source...
Go to PubMed...
- Niu X.Y., Sun X.M., Chen D.S., Zhang S.G. (2015): Soil microorganisms, nutrients and enzyme activity of Larix kaempferi plantation under differ-ent ages in mountainous region of eastern Liaoning Province, China. Ying Yong Sheng Tai Xue Bao, 26: 2663-2672.
- Ratledge C., Wynn J.P. (2002): The biochemistry and molecular biology of lipid accumulation in oleaginous microorganisms. Advances in Applied Microbiology, 51: 1-51.
Go to original source...
Go to PubMed...
- Shen F.F., Wu J.P., Fan H.B., Liu W.F., Guo X.M., Duan H.L., Hu L., Lei X.M., Wei X.H. (2019): Soil N/P and C/P ratio regulate the responses of soil microbial community composition and enzyme activities in a long-term nitrogen loaded Chinese fir forest. Plant and Soil, 436: 91-107.
Go to original source...
- Shi Z.T., Yang M.L., Li K.X., Yang L., Yang L.M. (2024): Influence of cultivation duration on microbial taxa aggregation in soils across ecological niches. Frontiers in Microbiology, 14: 1284191.
Go to original source...
Go to PubMed...
- Tan X., Xie B., Wang J., He W., Wang X., Wei G. (2014): County-scale spatial distribution of soil enzyme activities and enzyme activity indices in agricultural land: implications for soil quality assessment. The Scientific World Journal, 2014: 535768.
Go to original source...
Go to PubMed...
- Tong A.Z., Liu W., Liu Q., Xia G.Q., Zhu J.Y. (2021): Diversity and composition of the rhizosphere microbiome in various cultivation modesand ages. BMC Microbiology, 21: 18.
Go to original source...
Go to PubMed...
- Vendan R.T., Lee S.H., Yu Y.J., Rhee Y.H. (2012): Analysis of bacterial community in the ginseng soil using denaturing gradient gel electrophoresis (DGGE). Indian Journal of Microbiology, 52: 286-288.
Go to original source...
Go to PubMed...
- Wang T., Yang K.X., Ma Q.Y., Jiang X., Zhou Y.Q., Kong D.L., Wang Z.Y., Parales R.E., Li L., Zhao X., Ruan Z.Y. (2022): Rhizosphere microbial community diversity and function analysis of cut Chrysanthemum during continuous monocropping. Frontiers in Microbiology, 13: 801546.
Go to original source...
Go to PubMed...
- Wei W., Yang M., Liu Y.X., Huang H.C., Ye C., Zheng J.F., Gou G.W., Hao M.W., He X.H., Zhu S. (2018): Fertilizer N application rate impacts plant-soil feedback in a sanqi production system. Science of The Total Environment, 633: 796-807.
Go to original source...
Go to PubMed...
- William J.L., David M.N., Matthew C.F. (2014): Soil properties and tree species drive ß-diversity of soil bacterial communities. Soil Biology and Biochemistry, 76: 201-209.
Go to original source...
- Wu G., Yu F.F., Yuan M.M., Wang J.B., Liu C., He W.Z., Ge Z.H., Sun Y.X., Liu Y. (2022): Responses of rhizosphere bacterial and fungal commu-nities to the long-term continuous monoculture of water oat. Microorganisms, 10: 2174.
Go to original source...
Go to PubMed...
- Wu H., Yang H.Y., You X.L., Li Y.H. (2013): Diversity of endophytic fungi from roots of and their saponin yield capacities. Springerplus, 2: 107.
Go to original source...
Go to PubMed...
- Xu C.Y., Li Y.L., Hu X., Zang Q., Zhuang H.Y., Huang L.F. (2022): The influence of organic and conventional cultivation patterns on physicochem-ical property, enzyme activity and microbial community characteristics of paddy soil. Agriculture-Basel, 12: 121.
Go to original source...
- Xun W.B., Li W., Xiong W., Ren Y., Liu Y.P., Miao Y.Z., Xu Z.H., Zhang N., Shen Q.R., Zhang R.F. (2019): Diversity-triggered deterministic bacte-rial assembly constrains community functions. Nature Communications, 10: 3833.
Go to original source...
Go to PubMed...
- Zhalnina K., Louie K.B., Hao Z., Mansoori N., da Rocha U.N., Shi S.J., Cho H.J., Karaoz U., Lopue D., Bowen B.P., Firestone M.K., Northen T.R., Brodie E.L. (2018): Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology, 3: 470-480.
Go to original source...
Go to PubMed...
- Zhang G.X., Zhao Z.H., Yin X.A., Zhu Y.E. (2021): Impacts of biochars on bacterial community shifts and biodegradation of antibiotics in an agricultural soil during short-term incubation. Science of The Total Environment, 771: 144751.
Go to original source...
Go to PubMed...
- Zhang H., Abid S., Ahn J.C., Mathiyalagan R., Kim Y.J., Yang D.C., Wang Y.P. (2020): Characteristics of cultivars in Korea and China. Molecules, 25: 2635.
Go to original source...
Go to PubMed...
- Zhang Y.J., Ye C., Su Y.W., Peng W.C., Lu R., Liu Y.X., Huang H.C., He X.H., Yang M., Zhu S.S. (2022): Soil acidification caused by excessive application of nitrogen fertilizer aggravates soil-borne diseases: evidence from literature review and field trials. Agriculture Ecosystems and Envi-ronment, 340: 108176.
Go to original source...
- Zuppinger-Dingley D., Schmid B., Petermann J.S., Yadav V., De Deyn G.B., Flynn D.F.B. (2014): Selection for niche differentiation in plant com-munities increases biodiversity effects. Nature, 515: 108-111.
Go to original source...
Go to PubMed...
This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International (CC BY NC 4.0), which permits non-comercial use, distribution, and reproduction in any medium, provided the original publication is properly cited. No use, distribution or reproduction is permitted which does not comply with these terms.